Remove lineage on rankID

Feature requests
1

Hi,

using the latest trainingset by RDP, in which some renaming has been done:

To avoid confusion, the phylum Cyanobacteria has been renamed Cyanobacteria/Chloroplast. In this phylum, the Chloroplasts have been moved to an new artificial Chloroplast Chloroplast.

Now, when I want to remove taxon=Chloroplast, everything in the phylum is removed, including the Cyanobacteria I want to keep. I could remove the chloroplasts by typing the exact names, e.g. taxon=Streptophyta-Chlorophyta, but, looking at the rankId, there appear to be some unclassified chloroplast lineage(s), which can’t be removed without removing all unclassified sequences (taxon=unclassified).

Could not an extra parameter ‘rankID’ be included to handle everything at once?

2

Thanks for the heads up Kirk. This has been on my list of things to look at for a few weeks, but I’ve been dragging my feet. I’d also like to add a mitochondria lineage…

3

great!
I was planning to do this too and generally add some more genera.