Normalize Shared for Phylogenetic Diversity (non-OTU)?

Commands in mothur
1

Hi Pat,

I saw this (sweet) new feature in the most recent release and was hoping this would spare me the execution of an ugly unix code to randomly sample from my various groups. Will this only normalize shared OTU B-diversity? Would this work for shared phylogenetic diversity (unifrac P-test etc…)? Is it back to my ugly unix code?

Thanks 1,000,000

2

Right - at this point it is only for OTU/phylotype-based analysis. Doing it for the phylogenetic diversity beta diversity commands and a sub-sample command is in progress.