Hi,
I am working through my first batch of miseq data (have successfully ran several 454 projects). I am early on in the pipeline. Ran the make.contigs, summary and screen.seqs. My issue comes in at the unique.seqs command. I get thousands of these error and I am not sure how to go about fixing it.
**************************** is in your fasta file, sequence names must be unique, please correct.
The command finishes without crashing but the next command, count.seqs, sends up even more red flags (errors).
Any ideas?
Patrick