GUI

I know this is a big request, but I’d love a graphical user interface (GUI).

I see it as a similar format to simulink in MATLAB. A series of boxes with arrows connecting them. There’d be a separate connection for each mandatory input file and you could double click each box to change default parameters.

As I mentioned, I know it’s a big request, and probably in the works. But it would be amazing!

http://www.mothur.org/wiki/Download_mothur#Graphical_Interfaces_for_Mothur
http://www.mothur.org/wiki/Gui_Tutorial

Personally I don’t use it, but it’s there!