create.database missing names


I am trying to used the create.database command with the count file options on a normalized dataset, but I have an error saying that my repnames does not match. However, I am not using that as an input, so I do not know how to correct for it since I have not touched the names file since my first trim.seqs command. I am not sure what I am missing here!


make.shared(list=current, count=current, label=0.03)
sub.sample(list=current, count=current, size=166)
classify.otu(list=current, count=current, taxonomy=current, label=0.03)
get.oturep(, label=0.03, fasta=UQ_all.trim.unique.good.filter.unique.precluster.pick.fasta, column=UQ_all.trim.unique.good.filter.unique.precluster.pick.dist, count=UQ_all.trim.unique.good.filter.unique.precluster.uchime.pick.count_table)
create.database(, label=0.03,,,

Using as input file for the list parameter.
[ERROR]: you have 835 unique seqs in your repname file, but 76 seqs in your repfasta file. These should match.

Thanks for reporting this issue. We have a bug with in the get.oturep command with the count file. It will be fixed in our next release coming very soon.

I have updated to mothur v.1.33.3, but I am still having this issue. I am not able to follow the complete set of commands pasted below on subsampled versions, without getting the same error I was having before:

mothur > get.oturep(, label=0.03, fasta=final.fasta, column=final.dist, count=final.count_table)
mothur > classify.otu(, count=final.count_table, taxonomy=final.taxonomy, label=0.03)
mothur > create.database(, label=0.03,,,