I would like to make the claim that a certain bacterial family is especially diverse/species rich. Therefore I ran the classify OTU command for OTUs at the 3% level
For ~family level I extract all lines where taxlevel=5 from the tax.summary file. Does the column ‘total’ in the tax.summary file give me the total number of OTUs in the respective taxon (family) across all my samples?
taxlevel rankID taxon daughterlevels total
5 0.1.4.2.1.2 Flavobacteriaceae 6 35
Does that mean there is a total of 35 3% OTUs that are Flavobacteriaceae across all samples?
Does all this make sense to you?