Hello,
Is it possible to use a cons.taxonomy file and a file that lists the OTU names and their frequencies for each sample to make a tax.summary file (a short example below)?
“”,“sample1”,“sample2”,“sample3”
“Otu00001”, 1,2,3
“Otu00002”, 4,0,6
“Otu00003”, 5,3,4
Best wishes Natalie
This looks very similar to our shared file format, shared file. Are you looking to create a shared file with your data? If so, you can use the make.shared command in mothur.
mothur > make.shared(list=yourListFile, count=yourCountTable)
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