Hi, I’ve used the UPARSE pipeline with six different amplicons so far and am pleased with the results (none of these are barcoding genes), and I’d like to play around with some of the tests available in mothur. If anyone has a code they use to convert files from the UPARSE formats to a mothur shared file format and are willing to share it, I would greatly appreciate that. I can’t code worth beans and I have several deadlines just dumped in my lap which are “ASAP”, so I don’t really have time to fool around with making alignments of GenBank data for my nonstandard amplicons so I can use the mothur pipeline.
Thanks for any help you can provide,
Liz