Trim.seqs with groupfile

[westcott]

trim.seqs with existing groups file

Hello, Thanks for all of the great work on mothur. Some of our data needs to be manually massaged before going into mothur and as such I’m creating my own groups file. A problem that I’ve run into is that there does not seem to be a way to update my groups file from within mothur when I run trim.seqs. As a workaround, I’m implementing my own trimming by length & homopolymer (and thereby skipping trim.seqs all together), but it would be very cool if trim.seqs could take a groups file as a par…

Granted!