I was wondering how the ‘representative’ seqs in name or count file are picked ?
Asked because I encountered the issue like,
let’s say we have a group_A, which has seq_a1, seq_a2 (shown in the group file), but neither seqs are those ‘representative’ seqs. Then in the subsequent count file, under group_A, the sequence count is all 0, because only those ‘representative’ seqs are included in the count file. And that mislead me to think there were no seqs under group_A.
Maybe I missed something ?
Thanks !