# Plotting Unifrac matrix generated by Mothur

**URL:** https://forum.mothur.org/t/plotting-unifrac-matrix-generated-by-mothur/2353
**Category:** Commands in mothur
**Created:** [May 20, 2015, 1:35pm UTC](https://forum.mothur.org/t/plotting-unifrac-matrix-generated-by-mothur/2353 "2015-05-20T13:35:19Z")
**Posts on this page:** 2
**Page:** 1

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### Author: ![Kumari\_Richa](https://avatars.discourse-cdn.com/v4/letter/k/51bf81/32.png) [@Kumari\_Richa](https://forum.mothur.org/u/Kumari_Richa)
#### Post date: [May 20, 2015, 1:35pm UTC](https://forum.mothur.org/t/plotting-unifrac-matrix-generated-by-mothur/2353/1 "2015-05-20T13:35:19Z")

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Hi,

I performed UniFrac using mothur but not able to plot it, since I lack knowledge of R. Since I am at the end of my thesis, I do not have enough time learn R. Can anyone please suggest me how can I plot the generated unifrac matrix? If In R, Could anyone please forward me the scripts ?

  
Looking forward and sincere thanks in advance

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### Author: ![pschloss](https://yyz2.discourse-cdn.com/flex036/user_avatar/forum.mothur.org/pschloss/32/4_2.png) [@pschloss](https://forum.mothur.org/u/pschloss)
#### Post date: [May 25, 2015, 2:37pm UTC](https://forum.mothur.org/t/plotting-unifrac-matrix-generated-by-mothur/2353/2 "2015-05-25T14:37:41Z")

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People rarely want to plot a distance matrix. Usually, they want to use pcoa or nmds to build the input files for ordinations or tree.shared to build a dendrogram. If you can give us some more details, we can go from there.

Pat
