Hi,
My PI was wondering about the meaning of the quotation marks around some taxonomic classifications after running classify.otus:
For example in this below case:
Bacteria(100);“Actinobacteria”(100);Actinobacteria(100);Actinomycetales(100);unclassified(100);unclassified(100);
Bacteria(100);unclassified(100);unclassified(100);unclassified(100);unclassified(100);unclassified(100);
Bacteria(100);“Proteobacteria”(100);Gammaproteobacteria(100);Pasteurellales(100);Pasteurellaceae(100);unclassified(100);
Bacteria(100);Firmicutes(100);Bacilli(100);Bacillales(100);unclassified(100);unclassified(100);
why are Actinobacteria and Proteobacteria in quotation marks but Firmicutes is not?
Thanks for your help,
Laura