# How to load mothur and run make.contigs on cluster with sbatch script

**URL:** <https://forum.mothur.org/t/how-to-load-mothur-and-run-make-contigs-on-cluster-with-sbatch-script/19759>\
**Category:** Uncategorized\
**Created:** [March 6, 2019, 5:42pm UTC](https://forum.mothur.org/t/how-to-load-mothur-and-run-make-contigs-on-cluster-with-sbatch-script/19759 "2019-03-06T17:42:13Z")\
**Posts on this page:** 3\
**Page:** 1

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**Author:** ![rama](https://avatars.discourse-cdn.com/v4/letter/r/ccd318/32.png) [@rama](https://forum.mothur.org/u/rama)\
**Post date:** [March 6, 2019, 5:42pm UTC](https://forum.mothur.org/t/how-to-load-mothur-and-run-make-contigs-on-cluster-with-sbatch-script/19759/1 "2019-03-06T17:42:13Z")

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Hi Team,

I have huge dataset for demultiplexing and I would like to know the procedure for how to install mothur on the cluster and run make.contigs using sbatch script.

Thanking you for the help,  
Sincerely,  
Sravani.

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**Author:** ![pschloss](https://yyz2.discourse-cdn.com/flex036/user_avatar/forum.mothur.org/pschloss/32/4_2.png) [@pschloss](https://forum.mothur.org/u/pschloss)\
**Post date:** [March 11, 2019, 7:09pm UTC](https://forum.mothur.org/t/how-to-load-mothur-and-run-make-contigs-on-cluster-with-sbatch-script/19759/2 "2019-03-11T19:09:02Z")

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You probably want to talk with your sysadmin on how best to install the software. You can get a precompiled linux or source code version of mothur from our [GitHub repository](https://github.com/mothur/mothur/releases/latest). I’d encourage you to follow the [MiSeq SOP](https://github.com/mothur/mothur/releases/latest) and check out the batch file that accompanies the data files that are used with that tutorial.

Pat

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**Author:** ![rama](https://avatars.discourse-cdn.com/v4/letter/r/ccd318/32.png) [@rama](https://forum.mothur.org/u/rama)\
**Post date:** [March 11, 2019, 7:22pm UTC](https://forum.mothur.org/t/how-to-load-mothur-and-run-make-contigs-on-cluster-with-sbatch-script/19759/3 "2019-03-11T19:22:40Z")

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Thank you, Pat. I have followed the [MiSeq SOP](https://github.com/mothur/mothur/releases/latest) section and it worked.

-Sravani
