Hi
I really don’t understand the results I’m retrieving with the command
biom.info(biom=XXXX.biom, printlevel=3, output=simple)
From the log file the count.groups gives the number
A1 contains 56084.
MM1 contains 60715.
P contains 117932.
R contains 83845.
X contains 91716.
Total seqs: 410292.
on XXX.cons.taxonomy the sum of all sequences from all OTUs is 410292 (the same as above)
but that is not the value that I get when doing the biom.info command that provides the
total A1 MM P R X
10541 1663 2515 2989 2338 2457
why is that?
Thank you for any help understanding this discrepancy.