# get.oturep in mothur gui

**URL:** <https://forum.mothur.org/t/get-oturep-in-mothur-gui/1830>\
**Category:** mothur bugs\
**Created:** [May 7, 2014, 9:43am UTC](https://forum.mothur.org/t/get-oturep-in-mothur-gui/1830 "2014-05-07T09:43:45Z")\
**Posts on this page:** 1\
**Page:** 1

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**Author:** ![PapaSmurf](https://avatars.discourse-cdn.com/v4/letter/p/90ced4/32.png) [@PapaSmurf](https://forum.mothur.org/u/PapaSmurf)\
**Post date:** [May 7, 2014, 9:43am UTC](https://forum.mothur.org/t/get-oturep-in-mothur-gui/1830/1 "2014-05-07T09:43:45Z")

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Hei,  
I believe there is a bug in the get.oturep command in mothur gui.  
Even when you put a name files, it keeps requesting for a count file (red dot nearby the field), and a " get.oturep requires you to provide all of the following file type if you provide any: column, count,n ame. Stopping pipeline" message appears when starting.  
I juts ran the command in the terminal mothur without any count file, and it works fine.

mothur \> get.oturep(column=flange.silva.final.dist, name=flange.silva.final.names, fasta=flange.silva.final.fasta, list=flange.silva.final.an.list)

\*\*\*\*\*\*\*\*\*\*\*\*\*\*\*\*\*\*\*\*# **#** # **#** # **#** # **#** # **#** #  
Reading matrix: ||||||||||||||||||||||||||||||||||||||||||||||||||||

* * *

unique 4936  
0.01 3588  
0.02 1807  
0.03 1504  
0.04 1352  
0.05 1241  
0.06 1132  
0.07 1029

Output File Names:  
flange.silva.final.an.unique.rep.names  
flange.silva.final.an.0.01.rep.names  
flange.silva.final.an.0.02.rep.names  
flange.silva.final.an.0.03.rep.names  
flange.silva.final.an.0.04.rep.names  
flange.silva.final.an.0.05.rep.names  
flange.silva.final.an.0.06.rep.names  
flange.silva.final.an.0.07.rep.names  
flange.silva.final.an.0.01.rep.fasta  
flange.silva.final.an.0.02.rep.fasta  
flange.silva.final.an.0.03.rep.fasta  
flange.silva.final.an.0.04.rep.fasta  
flange.silva.final.an.0.05.rep.fasta  
flange.silva.final.an.0.06.rep.fasta  
flange.silva.final.an.0.07.rep.fasta  
flange.silva.final.an.unique.rep.fasta

regards.