# fastq.info Error

**URL:** https://forum.mothur.org/t/fastq-info-error/1035
**Category:** mothur bugs
**Created:** [September 6, 2012, 7:00pm UTC](https://forum.mothur.org/t/fastq-info-error/1035 "2012-09-06T19:00:17Z")
**Posts on this page:** 2
**Page:** 1

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### Author: ![eme47](https://avatars.discourse-cdn.com/v4/letter/e/c68b51/32.png) [@eme47](https://forum.mothur.org/u/eme47)
#### Post date: [September 6, 2012, 7:00pm UTC](https://forum.mothur.org/t/fastq-info-error/1035/1 "2012-09-06T19:00:17Z")

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I have loaded multiple Illumina fastq files onto a server and I’m utilizing mothur via command line. My end goal is to use the trim.seqs maxhomop command to remove poly-A runs in my data, which has been successful for a number of the files I’ve entered. However for a handful I enter the command:

mothur \> fastq.info(fastq=30\_1.fastq)

And get the following:

[ERROR]: Blank quality name.

Another error reads:

[ERROR]: Lengths do not match for sequence D8GSQ5P1:2:1102:5739:28694#0/1. Read 101 characters for fasta and 100 characters for quality scores.

I’m not sure what to do about blank quality names, but is there a way to change a parameter to allow for different lengths of characters in the fasta and quality scores?

Additionally, is there a way to set up batch run to run fastq.info from multiple fastq at the same time?

Thanks for your help!  
~Erin

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### Author: ![westcott](https://yyz2.discourse-cdn.com/flex036/user_avatar/forum.mothur.org/westcott/32/18_2.png) [@westcott](https://forum.mothur.org/u/westcott)
#### Post date: [September 28, 2012, 3:14pm UTC](https://forum.mothur.org/t/fastq-info-error/1035/2 "2012-09-28T15:14:07Z")

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What version of mothur are you using? Could there be an issue with the file you are trying to process? If you want to send the fastq file to [mothur.bugs@gmail.com](mailto:mothur.bugs@gmail.com) I can try to troubleshoot it for you.
