Hi!
I am following the MiSeq SOP for bacterial 16s sequences.
I can go all the way through the SOP unto the unique seqs after the alignment step.
When I try this command: mothur > unique.seqs(fasta=16s.trim.contigs.good.unique.good.filter.fasta, count=16s.trim.contigs.good.good.count_table)
I get the following error: [ERROR]: cannot convert roupIndex to an integer.
[ERROR]: cannot convert For to an integer.
I couldn’t find anything similar in the forum.
Thanks for your help!