empty stability.trim.contigs.good.unique.good.align

Hello!

After running unique.seqs and align.seqs stability.trim.contigs.good.unique.good.align is empty, the lines before note the removal of groups because all of their sequences have been removed. Why is this happening and how can i fix it?

Best,
E

I suspect there is a problem with how you are running screen.seqs after align.seqs. Can you post the output from running summary.seqs on align.seqs stability.trim.contigs.good.unique.align and what you are using for your screen.seqs command?

Pat