# count.seqs ERROR

**URL:** https://forum.mothur.org/t/count-seqs-error/2816
**Category:** mothur bugs
**Created:** [April 20, 2016, 10:39am UTC](https://forum.mothur.org/t/count-seqs-error/2816 "2016-04-20T10:39:44Z")
**Posts on this page:** 2
**Page:** 1

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### Author: ![JuanjoR](https://avatars.discourse-cdn.com/v4/letter/j/94ad74/32.png) [@JuanjoR](https://forum.mothur.org/u/JuanjoR)
#### Post date: [April 20, 2016, 10:39am UTC](https://forum.mothur.org/t/count-seqs-error/2816/1 "2016-04-20T10:39:44Z")

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Hi all,

I’m going through MiSeq SOP protocol and got an ERROR message when I run count.seqs:

mothur \> count.seqs(name=stability.trim.contigs.good.good.names, group=stability.contigs.good.good.groups, processors=16)

Using 16 processors.  
[ERROR]: processes reported processing 1376092 sequences, but group file indicates you have 3130329 sequences. Either you have a file mismatch or a process failed to complete the task assigned to it.

I run the same command a few weeks ago using the same dataset and didn’t get any error. Now I’m going through the same steps again because I made a mistake in a previous step, but apparently this time I’m getting this error. So I don’t see how it can be due to “a file mismatch”. How could have “the process failed to complete the task assigned to it”?

Thanks in advance,

Juanjo

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### Author: ![westcott](https://yyz2.discourse-cdn.com/flex036/user_avatar/forum.mothur.org/westcott/32/18_2.png) [@westcott](https://forum.mothur.org/u/westcott)
#### Post date: [May 2, 2016, 3:20pm UTC](https://forum.mothur.org/t/count-seqs-error/2816/2 "2016-05-02T15:20:44Z")

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The error is occurring because some of the multiple processes failed. Have you tried rerunning the command?
