compile from source issue

I’m trying to help someone install mothur on OS/X 10.11 and am getting the following error

xcrun: error: invalid active developer path (/Library/Developer/CommandLineTools), missing xcrun at: /Library/Developer/CommandLineTools/usr/bin/xcrun

He doesn’t have any “bin” inside /Library/Developer/CommandLineTools and I dont’ know OS well enough to know how to fix that.

After I updated to OSX 10.11 my x-code installation needed to be reinstalled to work.

Check what the current path is:

xcode-select --print-path


xcode-select --install

or download the X-code command line tools from Apple