# Commands classify.seques

**URL:** <https://forum.mothur.org/t/commands-classify-seques/22253>\
**Category:** Commands in mothur\
**Created:** [November 26, 2024, 6:24pm UTC](https://forum.mothur.org/t/commands-classify-seques/22253 "2024-11-26T18:24:57Z")\
**Posts on this page:** 3\
**Page:** 1

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**Author:** ![emanuelimarch](https://avatars.discourse-cdn.com/v4/letter/e/d2c977/32.png) [@emanuelimarch](https://forum.mothur.org/u/emanuelimarch)\
**Post date:** [November 26, 2024, 6:24pm UTC](https://forum.mothur.org/t/commands-classify-seques/22253/1 "2024-11-26T18:24:57Z")

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I tried running the classify.seqs function using the following files reference=silva.nr\_v138\_2.align taxonomy=silva.nr\_v138\_2.tax, but it returns the following message  
AB515328.GQTSp198’ is in your template file and is not in your taxonomy file.  
Please correct.  
I used the same files through galaxy and it generated the files, can someone help me using command line, I’m using version 1.48.0

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**Author:** ![pschloss](https://yyz2.discourse-cdn.com/flex036/user_avatar/forum.mothur.org/pschloss/32/4_2.png) [@pschloss](https://forum.mothur.org/u/pschloss)\
**Post date:** [November 27, 2024, 1:03pm UTC](https://forum.mothur.org/t/commands-classify-seques/22253/2 "2024-11-27T13:03:53Z")

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Can you redownload the reference files and try again? We had to update them because there was a problem and I worry you got the older version.

Pat

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**Author:** ![system](https://yyz2.discourse-cdn.com/flex036/user_avatar/forum.mothur.org/system/32/2_2.png) [@system](https://forum.mothur.org/u/system)\
**Post date:** [December 7, 2024, 1:03pm UTC](https://forum.mothur.org/t/commands-classify-seques/22253/3 "2024-12-07T13:03:58Z")

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