# command unifrac.weighted, bug? **URL:** \ **Category:** mothur bugs\ **Created:** [September 24, 2012, 6:31am UTC](https://forum.mothur.org/t/command-unifrac-weighted-bug/1057 "2012-09-24T06:31:48Z")\ **Posts on this page:** 4\ **Page:** 1
**Author:** ![lusilan](https://avatars.discourse-cdn.com/v4/letter/l/b5e925/32.png) [@lusilan](https://forum.mothur.org/u/lusilan)\ **Post date:** [September 24, 2012, 6:31am UTC](https://forum.mothur.org/t/command-unifrac-weighted-bug/1057/1 "2012-09-24T06:31:48Z")
HELLO I’ve met a lot of problems :x , see the follows \_mothur \> unifrac.weighted(tree=FL.trim.unique.good.pick.filter.fn.jclass.0.03.tre,group=FL.good.pick.groups,name=FL.trim.good.pick.names,distance=square,processors=2) Using 2 processors. Name: X\_M is not in your groupfile, and will be disregarded. Name: X\_J is not in your groupfile, and will be disregarded. Name: N\_M is not in your groupfile, and will be disregarded. Name: N\_K is not in your groupfile, and will be disregarded. Name: N\_J is not in your groupfile, and will be disregarded. Name: N\_H is not in your groupfile, and will be disregarded. Name: G2\_H is not in your groupfile, and will be disregarded. Name: G2\_J is not in your groupfile, and will be disregarded. Name: G1\_K is not in your groupfile, and will be disregarded. Name: D\_J is not in your groupfile, and will be disregarded. Name: D\_H is not in your groupfile, and will be disregarded. Name: X\_H is not in your groupfile, and will be disregarded. Name: G2\_M is not in your groupfile, and will be disregarded. Name: G1\_Z is not in your groupfile, and will be disregarded. Name: XN\_M is not in your groupfile, and will be disregarded. Name: M\_M is not in your groupfile, and will be disregarded. Name: D\_Z is not in your groupfile, and will be disregarded. Name: FY\_XN is not in your groupfile, and will be disregarded. Name: FY\_X is not in your groupfile, and will be disregarded. Name: FY\_D is not in your groupfile, and will be disregarded. Name: FY\_N is not in your groupfile, and will be disregarded. Name: FY\_G2 is not in your groupfile, and will be disregarded. Name: FY\_M is not in your groupfile, and will be disregarded. Name: FY\_G1 is not in your groupfile, and will be disregarded. X\_M is not in your name file, please correct.\_ The question is these names in my groupfile, see … \_mothur \> count.groups(group=FL.good.pick.groups) D\_H contains 5228. D\_J contains 4056. D\_Z contains 5045. FY\_D contains 5738. FY\_G1 contains 3288. FY\_G2 contains 4228. FY\_M contains 2983. FY\_N contains 3413. FY\_X contains 4527. FY\_XN contains 5780. G1\_K contains 5676. G1\_Z contains 4332. G2\_H contains 3789. G2\_J contains 4815. G2\_M contains 5107. M\_M contains 4703. N\_H contains 5701. N\_J contains 3898. N\_K contains 4876. N\_M contains 4668. XN\_M contains 5186. X\_H contains 4929. X\_J contains 5193. X\_M contains 4632. mothur \> get.current()() Current files saved by mothur: group=FL.good.pick.groups\_ please give some explaining about this, which would be highly appreciated! ---
**Author:** ![westcott](https://yyz2.discourse-cdn.com/flex036/user_avatar/forum.mothur.org/westcott/32/18_2.png) [@westcott](https://forum.mothur.org/u/westcott)\ **Post date:** [September 24, 2012, 11:20am UTC](https://forum.mothur.org/t/command-unifrac-weighted-bug/1057/2 "2012-09-24T11:20:21Z")
Could you send your files to [mothur.bugs@gmail.com](mailto:mothur.bugs@gmail.com)? ---
**Author:** ![glecleir](https://avatars.discourse-cdn.com/v4/letter/g/f6c823/32.png) [@glecleir](https://forum.mothur.org/u/glecleir)\ **Post date:** [December 14, 2012, 2:42pm UTC](https://forum.mothur.org/t/command-unifrac-weighted-bug/1057/3 "2012-12-14T14:42:25Z")
Has there been any resolution to this issue? I think I am having the same problem. Thanks! ---
**Author:** ![pschloss](https://yyz2.discourse-cdn.com/flex036/user_avatar/forum.mothur.org/pschloss/32/4_2.png) [@pschloss](https://forum.mothur.org/u/pschloss)\ **Post date:** [December 17, 2012, 11:53am UTC](https://forum.mothur.org/t/command-unifrac-weighted-bug/1057/4 "2012-12-17T11:53:06Z")
We never heard back, but what I suspect is this… ```nohighlight mothur > unifrac.weighted(tree=FL.trim.unique.good.pick.filter.fn.jclass.0.03.tre,group=FL.good.pick.groups,name=FL.trim.good.pick.names,distance=square,processors=2) ``` The user gave a tree made of the groups, but the group file has the names of all the sequences. Either they needed a tree file that was made by the clearcut command or a group file where the first column was the names of the groups and the second was a secondary form of grouping.