mothur

Clearcut alternative

Hello

I’m using MiSeqSOP and everything was running okay until the clearcut because my data it is too big. Is there any alternative command to generate phylogenetic tree? Thanks.

Hi!

I’d suggest forgoing the phylogenetic approaches and using the OTU-based approaches instead. We have yet to find a case where alpha or beta diversity results are different between the OTU and phylogenetic approaches.

Pat

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