bug in degap.seqs


I’m trying to run a pipeline that involving a degap.seqs steps. Degap.seqs works fine in mothur 1.34.4. However, it doesn’t work correctly in any of the newer versions in which I’ve tried it (1.37.0, 1.38.0, and 1.39.0). In the log file, it says it’s created a .ng.fasta file, but what it actually creates is a temp file which downstream commands won’t open.

I am not able to reproduce that. Could you send your files to mothur.bugs@gmail.com?