I’m getting the following error when i try to use compressed fastq.
make.contigs(ffastq=20140624_Undetermined_S0_L001_R1_001.fastq.gz , rfastq=20140624_Undetermined_S0_L001_R2_001.fastq.gz , findex=20140624_Undetermined_S0_L001_I1_001.fastq.gz , oligos=20140624.oligos , processors=16)
Unable to open 20140624_Undetermined_S0_L001_R1_001.fastq.gz . Trying default /export/apps/20140624_Undetermined_S0_L001_R1_001.fastq.gz
Unable to open /export/apps/20140624_Undetermined_S0_L001_R1_001.fastq.gz
Unable to open 20140624_Undetermined_S0_L001_R2_001.fastq.gz . Trying default /export/apps/20140624_Undetermined_S0_L001_R2_001.fastq.gz
Unable to open /export/apps/20140624_Undetermined_S0_L001_R2_001.fastq.gz
Unable to open 20140624.oligos . Trying default /export/apps/20140624.oligos
Unable to open /export/apps/20140624.oligos
Unable to open 20140624_Undetermined_S0_L001_I1_001.fastq.gz . Trying default /export/apps/20140624_Undetermined_S0_L001_I1_001.fastq.gz
Unable to open /export/apps/20140624_Undetermined_S0_L001_I1_001.fastq.gz
Illegal instruction