mothur

Commands in mothur


Topic Replies Activity
Corr.axes metadata - catagorical data and missing values 3 June 9, 2019
make.shared error 7 May 28, 2019
Pick.pick output file 8 June 2, 2019
Assessing error rate with a mock community - 10 species (including fungi) in log distribution 3 June 2, 2019
make.contigs 4 May 17, 2019
Make.sra "error": "sample A is a duplicate sample to B 6 May 25, 2019
Problem for demultiplexing Miseq Paired end reads using make.contigs with oligos file 4 May 20, 2019
Which label or taxlevel means genus level in mothur? 3 May 20, 2019
Which commands require prior use of the "sub.sample" command? 4 May 20, 2019
Error in nmds plots with unifrac files 3 May 7, 2019
Two output files from summary.single 3 May 16, 2019
Make.lefse - [ERROR]: can't find Otu689 in constaxonomy file. Do the distances match, did you forget to use the label parameter? 6 May 11, 2019
About the determination of start and end of reference database 5 May 5, 2019
Remove.rare taking a long time to run 4 April 27, 2019
Phylo.diversity = Faith's PD? 3 April 27, 2019
About the trimming of poor quality bases from fastq files during the usage of mothur 4 April 27, 2019
Help with get.lineage 5 April 15, 2019
Dist.seqs (set RAM?) 8 April 13, 2019
Remove.lineages; Removing Cyanobacteria->chloroplast sequences 4 March 22, 2019
Create OTU table comparable to QIIME 5 March 30, 2019
Mothur remove all sequence from all groups 6 March 22, 2019
Could I create PCoA Plot in Mothur program? 5 March 21, 2019
Cluster.split issue "Num_Dists_Below_Cutoff" 5 March 14, 2019
Pre.cluster "could not open x.map" Error 3 March 9, 2019
LEfSe on familiy level? 3 March 7, 2019
Problems using make.biom for PICRUSt 10 February 22, 2019
Combining raw data with multiple Illumina MiSeq runs with overlapping barcodes 10 March 4, 2019
Trim.Seqs (Output blank) 4 March 1, 2019
Merge .fasta files for OTU counting 7 March 1, 2019
General question about make.contigs 3 March 1, 2019