Commands in mothur

Mismatch detected after align (4)
Summary.seqs = 25% of the base to be ambiguous (17)
Microbial abundance/diversity (4)
Pre.cluster unoise/deblur (3)
Sub.sample/remove rare with relative abundance (3)
Missing pcr.seqs output (5)
NCBI database (11)
make.contigs with oligo creating new names (10)
Mothur-mpi commands problems (2)
Align.seqs SimBtwnQuery&Template (2)
Remove.lineages error (8)
Rarefaction.single processors parameters remove (6)
Warning notice from classify.otu (3)
make.sra command only generate submission.xml and submit.ready files (4)
make.contigs w/ oligos file (5)
classify.otu with an updated NCBI reference taxonomy file (5)
Classify.otu results in many sequences not in the taxonomy file (4)
aligning fungal ITS sequences for pre.cluster? (2)
rename.seqs problem (1)
aligning sequences to SILVA bacterial reference database (2)
screen.seqs command hangs (3)
Compare models for AMOVA (2)
new make.contigs (4)
Generate fasta file from sub.sample shared file (3)
how to get mothur to read files from a portable hard drive (2)
ITS reference alignment (4)
non-sequence data (2)
make.contigs for dual-index with heterogeneity spacers? (2)
make.file and make.contigs " (2)" in fastq file names (2)
clearcut: any way to reassign names of tree tips? (5)