mothur

Commands in mothur


Topic Replies Activity
Align.seqs() [ERROR]: template is not aligned, aborting 8 February 10, 2019
Clustering a large dataset 7 February 8, 2019
Fungal sequence processing SOP 4 February 4, 2019
Filter.seqs (V3-V4 data) 5 February 3, 2019
Filter.seqs usage 3 February 3, 2019
Pre.cluster bug 4 February 1, 2019
Pcr.seqs generates empty files with used primers 5 January 31, 2019
Problems with Archaea seqs when following MiSeq SOP 3 January 27, 2019
Demultiplexing dual indexed run? 6 January 11, 2019
Run QIIME2 test data with Mothur 4 January 8, 2019
Trim.seqs command issues 3 January 7, 2019
SOP for ITS analysis using Sanger sequencing? 6 January 13, 2019
Analysis Start and to differ groups 4 December 30, 2018
Cluster.split or phylotype binning 5 December 30, 2018
Heatmap.bin .SVG format not generating 3 December 9, 2018
Mismatch detected after align 4 December 7, 2018
Summary.seqs = 25% of the base to be ambiguous 17 December 9, 2018
Microbial abundance/diversity 4 December 8, 2018
Pre.cluster unoise/deblur 3 December 7, 2018
Sub.sample/remove rare with relative abundance 3 November 29, 2018
Missing pcr.seqs output 5 November 23, 2018
NCBI database 11 November 8, 2018
make.contigs with oligo creating new names 10 November 8, 2018
Mothur-mpi commands problems 2 November 6, 2018
Align.seqs SimBtwnQuery&Template 2 November 6, 2018
Remove.lineages error 8 November 6, 2018
Rarefaction.single processors parameters remove 6 November 1, 2018
Warning notice from classify.otu 3 October 26, 2018
make.sra command only generate submission.xml and submit.ready files 4 October 8, 2018
make.contigs w/ oligos file 5 September 24, 2018