mothur

Commands in mothur


Topic Replies Activity
About the Commands in mothur category 2 April 25, 2019
Make.lefse - [ERROR]: can't find Otu689 in constaxonomy file. Do the distances match, did you forget to use the label parameter? 1 April 25, 2019
Error running nmds command with unifrac output 1 April 25, 2019
About the determination of start and end of reference database 4 April 25, 2019
Remove.rare taking a long time to run 3 April 17, 2019
Phylo.diversity = Faith's PD? 2 April 17, 2019
About the trimming of poor quality bases from fastq files during the usage of mothur 3 April 17, 2019
Classify.seqs using HPCC error 2 April 20, 2019
Help with get.lineage 5 April 15, 2019
Dist.seqs (set RAM?) 8 April 13, 2019
Remove.lineages; Removing Cyanobacteria->chloroplast sequences 4 March 22, 2019
Create OTU table comparable to QIIME 5 March 30, 2019
Mothur remove all sequence from all groups 6 March 22, 2019
Could I create PCoA Plot in Mothur program? 5 March 21, 2019
Cluster.split issue "Num_Dists_Below_Cutoff" 5 March 14, 2019
Pre.cluster "could not open x.map" Error 3 March 9, 2019
LEfSe on familiy level? 3 March 7, 2019
Problems using make.biom for PICRUSt 10 February 22, 2019
Combining raw data with multiple Illumina MiSeq runs with overlapping barcodes 10 March 4, 2019
Trim.Seqs (Output blank) 4 March 1, 2019
Merge .fasta files for OTU counting 7 March 1, 2019
General question about make.contigs 3 March 1, 2019
Pre-clustering, 40 days in the wilderness? 7 February 14, 2019
Align.seqs() [ERROR]: template is not aligned, aborting 8 February 10, 2019
Clustering a large dataset 7 February 8, 2019
Fungal sequence processing SOP 4 February 4, 2019
Filter.seqs (V3-V4 data) 5 February 3, 2019
Filter.seqs usage 3 February 3, 2019
Pre.cluster bug 4 February 1, 2019
Pcr.seqs generates empty files with used primers 5 January 31, 2019