mothur

Commands in mothur


Topic Replies Activity
About the Commands in mothur category 2 April 25, 2019
Running Mothur in command line mode 1 February 27, 2020
No data in the output of corr.axes command 1 February 27, 2020
Pre.cluster diff number setting based on sequence lenght 2 February 26, 2020
Generate list file from OTU table 4 February 26, 2020
How can I tell what the categories are for merge.groups? 1 February 26, 2020
Length of filtered alignment: 0 1 February 25, 2020
Having problems in make.contig step 3 February 22, 2020
How to specify path on HPC for where to store the dist file? 5 February 20, 2020
Metastats: Missing share info for sets 2 February 20, 2020
How to work with single and paired reads 2 February 20, 2020
Mothur: format to use Picrust 7 February 18, 2020
Fasta and count file mismatch in summary.seqs 2 February 24, 2020
filter.seqs gives the error: Sequences are not all the same length, please correct. 12 February 12, 2020
Phylogenetic methods in large dataset 8 February 16, 2020
Most sequences end up in the scrap fasta file 4 February 9, 2020
Pre.cluster Segmentation fault (core dumped) error in Linux 5 February 9, 2020
Comparison studies on amplicon sequence data 4 February 1, 2020
Summary.single to calculate alpha diversity 6 January 29, 2020
Error message from make.sra 4 January 28, 2020
Cannot open mothur.logfile 3 January 27, 2020
Error message in make.sra command 4 January 25, 2020
Creating a customized reference alignment for V1-V2 3 January 19, 2020
Files to plot rarefaction curve 3 January 2, 2020
All sequences in scrap after make.contigs 9 December 30, 2019
How do I calculate exact p-value when p<0.001 5 December 21, 2019
Make.sra with demultiplex paired end fastq files 3 December 20, 2019
Discrepancy between fasta and group counts 17 December 3, 2019
I got an error at get. groups 2 December 6, 2019
Need to separate Bacteria, Archaea and Eukarya sequences 5 December 5, 2019